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Chromatogram viewer sequencher
Chromatogram viewer sequencher







chromatogram viewer sequencher

Use only ABI (PN: N8010560) plates which you may obtain from us. Submit samples in 8-strip PCR tubes or 96-well plates. For example, if your sample name is AB123 and the primer is M13F the electropherogram file name will be AB123-M13F.ab1. The file name of your data will consist of your sample name and primer. Drop off your samples and request forms in the refrigerator at the front of the lab.

chromatogram viewer sequencher

Print out 2 copies of your request-one for yourself and one to submit to the lab. hairpin or GC rich) next to the samples in question when you fill out the web request form. We will use extra polymerase, blend polymerases and / or alter the thermocycling conditions if you select “difficult template” and also indicate the nature of the difficulty (e.g. The LIMS asks if the template is “difficult to sequence”. Your account number must be exactly seven digits with no spaces, dashes etc. Once logged in, follow the instructions and call if you have any problems. Requests are submitted to:įirst time users must create an account before logging into the LIMS.

chromatogram viewer sequencher

Also see the Sample Submission in Detail section for additional information. Templates are mixed with primers and submitted in 12 ul as described in the Template Primer Quantity Table section.

chromatogram viewer sequencher

We use a laboratory information management system (dnaLIMS) to handle orders and distribute data. Template Preparation for Successful Automated DNA Sequencing How to Order Large DNA (>30,000bp) BACs, PACs, YACs, cosmids, fosmids Templateįor the following templates submit sample and primer in SEPARATE tubes: Template/Primer should be submitted in THE SAME tube. If your sample and primer combined is less than 12ul add deioinzed water to bring it up to 12ul. Recommended template and primer concentrations in a 12ul sample. 40-45☌.) If Tm is low, make the primer longer.

  • Avoid strings of four or more of same the base if possible.
  • Appropriate length to give Tm of ~55-60☌.
  • No palindromic sequence present, particularly at the 3’ end of primer.
  • No alternative hybridization sites in template (false priming).
  • You may want to do a Google search for “Oligo Molecular Weight Calculator” to find web pages that will calculate Tm quickly. We anneal at 50☌ and extend at 60☌ so make your primer melting point (Tm) ca. The sequence is readable about 30–50 bases downstream of the primer sequence. Maximum read lengths are approximately 1000 bases. We use the Applied Biosystems Model 3730 capillary DNA sequencer with Big Dye Terminator Cycle Sequencing Kit.









    Chromatogram viewer sequencher